- Blepharidophyllum clandestinum, Balantiopsis clandestina;Balantiopsis incrassata;Clandarium clandestinum;Diplophyllum clandestinum;Jungermannia clandestina;Martinellia clandestina;Plagiochila clandestina;Scapania clandestina
- Bryotropha similis, Bryotropha clandestina;Bryotropha pullifimbriella;Bryotropha tahavusella;Bryotropha thuleella Zeller, 1857;Bryotropha confinis Stainton, 1871;Bryotropha stolidella Morris, 1872;Bryotropha fuliginosella Snellen, 1882
- Clandestina clandestina, Purple Toothwort;Lathraea clandestina
- Frullania intumescens, Frullania clandestina;Frullania closterantha;Frullania cucullata;Frullania dubia;Frullania evolutiloba;Frullania fallax Steph;Frullania fusco-brunnea;Frullania longicollis;Frullania pachoensis;Lejeunea clandestina
- Ixocactus clandestinus, Cladocolea clandestina
- Schistochila repleta, Gottschea albistipula;Gottschea bicolor;Gottschea clandestina;Gottschea flavo-virens;Gottschea gregaria;Gottschea guttata;Gottschea heterocolpos;Gottschea heterodonta;Gottschea laciniosa;Gottschea longiseta;Gottschea macroamphigastra;Gottschea marginata;Gottschea pallescens;Gottschea steno-carpa;Jungermannia repleta;Schistochila heterodonta;Schistochila marginata
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