#This text file is 2012-12-17 draft of SIAD's controlled vocabulary for species interactions.
#Version 1.2 -- updated 2013-05-10 with additional terms from 
#	.../siad/data/source/biodiversity.org.au:dataexport/afd_ecologies-2013-03-15/values/ECOLOGY_CODE.txt listed in .../values/interactions.txt
#	Add: Active predator, Ant attended, Caterpillar feeder, Cnidarivore, Coprophagus, Ctenovore,
#	Deposit feeder, Ectocommensal, Endocommensal, Facultative predator, Fructivore, Funnel feeder,
#	Gallicolous, Grazer, Hyperparasitic, Leaf curl inducer, Leaf edge gall inducer, Leaf deformer, Leaf edge roll inducer,
#	Lichen feeder, Microepiphytes; Mollusc feeder, Moss feeder,
#	Nectivorous, Nomadic predator, Non feeder, Phyllode gluer, Planktivore, Planktovore,
#	Polyphagous, Saprophagous, Shredder, Suspension feeder; Symbiotic, Wood mining
#Version 2.1 -- updated 2013-06-27 with additional terms from 
#	http://trin.org.au/pub/Mangroves/SemanticLinksReportList/discover.tsv
#	Add: detritivoreon epiphyticon [hasdetritivore hasendozoochore hasepiphyte hasinquiline infectedby]
#	[inhabitedby] kleptoparasiticon [pollinatedby*] predates [preyof] saprotrophicon
#	*directional -- need to switch $name and $host_name
#	[not yet supported]
#It is based on the following sources:
#	siad/interactions.controlled_vocabulary.AFD.txt
#	siad/interactions.controlled_vocabulary.Croft,_Jim.txt
#	http://trin.org.au/pub/Mangroves/SemanticLinksReportList/discover.tsv
#	siad/interactions.controlled_vocabulary.Geromboux,_Christy.txt
#	siad/interactions.txt -- Malcolm Storey
#The hierarchy is separated by colons.  Comments and definitions follow hash signs.  Synonyms follow semicolons. 
#It assumes "subject" [verb] "object" as in
#	"taxon-1" [interaction term] "taxon-2", e. g., "cow" is [Consumer:Herbivore:Grazer] of "grass".
#It does not list the reciprocal relationships, in this example, "grass" is [Consumed:...] by "cow". 
#The +, -, and 0 describe how the interactions affect taxon-1/taxon-2, where 0 is neutral or unknown.
#Seed feeder, SeedFeeder, Seed-feeder, seed_feeder, etc. all normalize (using just lowercase letters) to 'Consumer:Herbivore:Granivore'
#We assume all terms are members of the superset 'Associate'. For instance, 'Associate:Consumer:Herbivore:Granivore'.

Associate	;Associates;Associated;Associates with;Associated with;Visits;Unknown 

Commensal				#+/0
	Commensal:Coprophagous	;Coprophage;Coprophagic;Coprophagus;Dung feeder		#feeds on dung or faecal material
	Commensal:Deposit feeder	#sift through soil
	Commensal:Detritivore	;Detritivorous; Detritus feeder; Detritivore on		#feeds on fragmented particulate organic matter
	Commensal:Ectocommensal
	Commensal:Endocommensal
	Commensal:Epiphyte			;Epiphytic; Epiphytic on
	Commensal:Epiphyte:Microepiphyte	;Microepiphytes
	Commensal:Epizoic	;Epizoite	#growing or living on an animal's external surface
	Commensal:Filter feeder			#filters suspended particulate organic matter from water
	Commensal:Funnel feeder
	Commensal:Inhabits
	Commensal:Inquiline	;Inquilinous
	Commensal:Necrophagous	;Necrophage;Necrophagic	#feeds on dead material
	Commensal:Non feeder
	Commensal:Phyllode gluer
	Commensal:Saprotroph	;Saprotrophic;Saprophagous;Saprophagic;Saprotrophic on		#feeds on decaying organic matter
	Commensal:Scavenger	;Carrion feeder	#any organism that feeds on carrion or organic refuse
	Commensal:Shredder			#feeds on microbially-conditioned leaf litter
	Commensal:Suspension feeder

Competitor						#-/-

Consumer	;Consumes;Eats;Feeds on;Feeds;Feeder			#+/-
	Consumer:Herbivore		;plant feeder;feeds on plants
		Consumer:Herbivore:Algal feeder	;feeds on algae;algae feeder
		Consumer:Herbivore:Florivore	;Florivorous		#feeds on flowers
		Consumer:Herbivore:Folivore	;Folivorous		#feeds on leaves
		Consumer:Herbivore:Frugivore	;Frugivorous;Fructivore;Fruit feeder
		Consumer:Herbivore:Fucivore	;Fucivorous	#feeds on seaweed
		Consumer:Herbivore:Fungivore	;Fungivorous;Fungal feeder
		Consumer:Herbivore:Gall former	;Gall inducer;Gall maker;Gallicolous	#forms an abnormal outgrowth from plant stem or leaf, usually caused by the presence of young insects
		Consumer:Herbivore:Gall former:Leaf edge gall inducer
		Consumer:Herbivore:Gall former:Pit gall inducer
		Consumer:Herbivore:Gall former:Twig gall inducer
		Consumer:Herbivore:Graminivore	;Graminivorous;Grass-feeder	#feeds or subsists on grasses
		Consumer:Herbivore:Granivore	;Granivorous;Seed predator;Eats seeds;Seed-eater;Seed feeder;Feeds on seeds
		Consumer:Herbivore:Grazer	;Feeding grazer		#feeds on herbage, algae or phytoplankton
		Consumer:Herbivore:Leaf curl inducer
		Consumer:Herbivore:Leaf deformer
		Consumer:Herbivore:Leaf edge roll inducer
		Consumer:Herbivore:Leaf miner	;Miner
		Consumer:Herbivore:Lichen feeder
		Consumer:Herbivore:Mellivore	;Nectarivorous;Nectarivore;Nectivorous;Nectivore	#feeds on nectar;nectar eating
		Consumer:Herbivore:Moss feeder
		Consumer:Herbivore:Parenchyma feeder
		Consumer:Herbivore:Phloem feeder
		Consumer:Herbivore:Phytophagous	;Phytophagic
		Consumer:Herbivore:Plant parasite
		Consumer:Herbivore:Root feeder		#feeds on roots
		Consumer:Herbivore:Sap feeder		#feeds on sap
		Consumer:Herbivore:Sap sucker
		Consumer:Herbivore:Sporophagous	;Sporophage		#feeds on spores
		Consumer:Herbivore:Wood borer		#burrows into and feeds on wood
		Consumer:Herbivore:Wood mining
		Consumer:Herbivore:Xylem feeder
	Consumer:Kleptoparasite	;Kleptoparasitic;Kleptoparasitic on
	Consumer:Myrmecophagous		;Mymecophagous;Myrmecophage		#feeds on ants
	Consumer:Omnivore	;Omnivorous		#feeds on a mixed diet of plant and animal material
	Consumer:Parasite:Infects		#HERE: 'parasite within host' -- WARNING: 'Infects' is a possible homonym -- see Transmits:Vector
	Consumer:Planktovore		;Plankton feeder;Planktivore	#misspelling
	Consumer:Polyphagous	;Polyphagic
	Consumer:Parasite	;parasitic;parasitize;parasitise;parasitizes;parasitises;parasitism;parasitic associate
		Consumer:Parasite:Ectoparasite	;Ectoparasitic
		Consumer:Parasite:Endoparasite	;Endoparasitic
		Consumer:Parasite:Mesoparasitic	;Mesoparasite
		Consumer:Parasite:Plant parasite
	Consumer:Parasitoid
		Consumer:Parasitoid:Ectoparasitoid
		Consumer:Parasitoid:Endoparasitoid
		Consumer:Parasitoid:Hyperparasite	;Hyperparasitoid;Hyperparasitic
	Consumer:Pest
	Consumer:Predator			;Active predator;Nomadic predator;Facultative predator; Predates	#preys on other organisms
		Consumer:Predator:Acariphagous	;Acariphage;Mite feeder
		Consumer:Predator:Arthropod feeder		#feeds on insects, spiders, etc.
		Consumer:Predator:Bacteria feeder
		Consumer:Predator:Caterpillar feeder
		Consumer:Predator:Carnivorous	;Carnivore;Meat eater;Flesh eater;Flesh feeder
		Consumer:Predator:Ctenovore	#comb jellies feed on microscopic larvae and rotifers to small crustacean adults
		Consumer:Predator:Cnidarivore	#feeds on jellyfish, corals and other members of phyllum Cnidaria
		Consumer:Predator:Insectivore	;Insectivorous;Insect feeder
		Consumer:Predator:Mollusc feeder
		Consumer:Predator:Piscivore	;Piscivorous;Fish feeder
	Consumer:Sanguinivore	;Sanguinivorous;Blood feeder;Blood sucker

Mutualist	;Mutualism;Attendant;Symbiotic;Symbiont					#+/+
	Mutualist:Attendant ants	;Ant attended
	Mutualist:Endozoochore	;Endozoochory
	Mutualist:Pollinates	;Pollinator

Neutral				;Occurs with			#0/0
Neutral:Flower gall associate
Neutral:Fungal associate	;Fungus associateFungus associated;Associated with fungi
Neutral:In Ficus sycones
Neutral:Insect associate
Neutral:Mite associate		;Mite associated
Neutral:Myrmecophilous	;Myrmecophile
Neutral:On		;Occurs on	#e. g., lichens
Neutral:On:Macrophytes	;Macrophyte associate;Associated with macrophytes;On macrophytes
Neutral:Plant associate
Neutral:Algae associate	;Algae

Transmits		;Transmit	#?/+/-	a three way interaction: species-x transmits species-y to species-z
Transmits:Vectors	;Vector		#HERE: 'vector of (disease) agent' 	WARNING: avoid 'Infects' as homonym -- see Consumer:Parasite:Infects