Biodiversity Informatics:
Creation of Web-based Tools for Invasive Species Identification,
Reporting, Mapping, and Other Biodiversity Information.

(see cover sheet pdf)

(see full Cooperative Award as pdf)


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AGREEMENT TABLE OF CONTENTS

A. This agreement consists of the following documents:

  1. Cover sheet, page 1;
  2. Agreement Table of Contents, page 2;
  3. Schedule of Articles, page 3 through 14;
  4. U.S. Geological Survey General Provisions and Grants and Cooperative Agreements, page 15 through 27.
  5. The Polistes Foundation Project Narrative Entitled "Cooperative Research on Biodiversity Informatics: Creation of Web-based Tools for Invasive Species Identification, Reporting, Mapping, and Other Biodiversity Information," pages 28 through 31.


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ARTICLE I -- SCOPE

This Cooperative Agreement is being entered into by the National Biological Information Infrastructure (NBII) of the Biological Resources Discipline's Informatics Program, with The Polistes Foundation, to continue with their collaborative strategy for the development of Web tools for biodiversity information research and management. Specifically, under this agreement, biodiversity professionals will be brought together to address pressing biodiversity information management needs such as the development of on-line tools to identify, report, and map invasive species; the creation of volunteer networks for early detection of invasive species; expansion of a global network to improve communication among invasive species online databases; the creation of data cleaning and quality assessment tools; and addressing other real-world problems related to biodiversity informatics and research.


ARTICLE II -- STATEMENT OF JOINT OBJECTIVES

This Cooperative Agreement is being entered into pursuant to the authority of 43 U.S.C. 31 et. Seq. The Organic Act of March 3, 1879. Congressional authorization (PL 110-161 Division F Title 1 Sec. 125) also states that the Secretary of the Interior may enter into cooperative agreements with any not-for-profit organization if the agreement will: (1) serve a mutual interest of the parties to the agreement in carrying out the programs administered by the Department of the Interior; and (2) all parties will contribute resources to the accomplishment of these objectives. This agreement's products and purpose will directly support the USGS Strategic Plan's Customer Thrust to expand data integration and develop predictive models, and the Program Thrust to enhance our predictive/forecast modeling capabilities. The agreement also supports the NBII's goal to support biological informatics research and development.

The NBII is a broad, collaborative program to provide increased access to data and information on the nation's biological resources. The NBII partners with organizations in government agencies, academic institutions, non-government organizations, and private industry to facilitate standards, tools, and technologies that make it easier to find, integrate, and apply biological research information. Resource managers, scientists, educators, and the general public use the NBII to answer a wide range of questions related to the management, use, or conservation of this nation's biological resources.

The purpose of the partnership is to provide a framework under which a variety of research and educational programs can be carried out in collaboration with the NBII. The establishment of this cooperative agreement will continue to benefit the research of biodiversity and invasive species in a number of ways.

First, contact and collaboration between scientists, communities, and organizations will continue to be enhanced through joint existing and future projects. The NBII's substantial observational and technological information management capabilities will continue to be made available to the research and interdisciplinary science community. This proposal outlines some of the possible research and educational activities that may fall under this cooperative agreement.



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The primary mission of The Polistes Foundation is to assemble and share knowledge about nature in order to improve education, health, agriculture, economic development, and conservation throughout the world. They seek to advance, through research and education, the fundamental understanding of better management of natural resources and biodiversity. The long-standing relationships of The Polistes Foundation with the University of Georgia, the Smithsonian Institution, the Missouri Botanical Garden, the American Museum of Natural History, and others have helped increase its state-of-the-art Web technologies in support of biodiversity analysis and modeling.

The Polistes Foundation continues to build a large diverse international network of partners who share expertise and resources to support their mission. These partners range from commercial companies such as Sun Microsystems, to herbaria and museums such as Chicago's Field Museum and the Academy of Natural Sciences, to other diverse organizations, agencies, and institutions such as the USGS Science Centers at Gainesville and Fort Collins, the National Park Service, BioNet International, the Global Biodiversity Information Facility, and Jane Goodall's Roots and Shoots.

The Polistes Foundation continues to be committed to leveraging technology to overcome hurdles that greatly impede citizens from contributing to the study and management of biological diversity and other natural resources. In particular, The Polistes Foundation's goal is to provide the means to identify, research, and map species of concern. With these tools, schools and volunteer organizations can help detect and manage invasive species in their local communities, by studying and reporting what they find, for example.


ARTICLE III -- PROJECT MANAGEMENT PLAN

During the life of this agreement, the NBII will provide training modules, travel support for participation in scientific meetings, partnership opportunities, participation in specialized biodiversity information working groups, cooperation on the creation of joint research publications, and a platform to distribute biodiversity tools and information on the Web.

The Polistes Foundation will continue to develop, integrate, and test software that allows people with minimal computer skills to collect, manage, and serve biodiversity information on the Web. They will expand their efforts to rapidly link information from multiple databases and Websites into composite pages that contain images, maps, identification guides, and other information. This will give teachers, students, citizen scientists, land managers, and scientists alike powerful tools to distinguish invasive species from each other and from native species with similar characteristics, to achieve broad benefit to the public.

The Polistes Foundation, through the Discover Life Web site and the NBII Web site, will continue to develop Web tools to report and map information about species, and through Web services and other information exchange techniques, make biodiversity data layers available to NBII, USGS, the Global Biodiversity Information Facility, and others.



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The Polistes Foundation will continue to support the NBII's coordination of the development of an invasive species information exchange protocol through their collaboration on the Global Invasive Species Information Network (GISIN). The USGS was requested by the National Invasive Species Council (NISC) Invasive Species Advisory Committee to prioritize the USGS supporting role of the NISC National Management Plan's Performance Element OC.8.2.5 (improving and expanding participation in GISIN). This cooperative agreement will help improve and expand scientific participation in the GISIN (in which the NBII takes a leadership role) and development of the GISIN information exchange protocol.

Two (2) months prior to the expiration of this cooperative agreement, The Polistes Foundation will submit through Grants.gov an application package for research work to be performed during years 2 through 5 of this cooperative agreement for consideration by the USGS. The application package shall include a Standard Form 424 "Application for Federal Assistance," a detailed technical proposal and budget in accordance with Office of Management and Budget Circular A110, as implemented by 14 CFR Part 12.


ARTICLE IV - FINANCIAL SUPPORT

A. Financial Support Arrangements--Under terms of the Cooperative Agreement, the USGS shall provide funds in the amount specified on the award sheet.

B. The total cost of this agreement is $120,008.00 for the entire period of the agreement, USGS' share is $120,008.00 and The Polistes Foundation share is $0.00.

C. The U.S. Geological Survey will contribute 100% or not to exceed $120,008.00 of the estimated cost of this agreement.

D. Predetermined indirect cost rates as follows are applicable under this agreement for the period indicated.

Indirect Cost Category Period Rate
Total Direct Costs 6/15/09 - 6/14/10 5%

E. Preaward costs not in excess of $20,228.00 incurred by The Polistes Foundation for salaries from June 15, 2009 through date of award, in anticipation of and prior to the execution of this cooperative agreement shall be recognized to the same extent as if incurred subsequent to the execution of this cooperative agreement.


ARTICLE V - PAYMENT

The Polistes Foundation shall not incur costs to be charged to the USGS, nor shall the USGS be obligated to reimburse The Polistes Foundation in excess of the funding actually obligated under this cooperative agreement.



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ARTICLE VI - TERM OF THE AGREEMENT

The term of this cooperative agreement shall be from June 15, 2009 through June 14, 2010. 8



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Continuation of this cooperative agreement for an additional four years is contingent upon: (l) continued program authorization; (2) availability of funds; (3) satisfactory progress toward program goals and research objectives; (4) compliance with the award's terms and conditions; (5) the U.S. Geological Survey's determination that continued funding is in the best interest of the Government.

ARTICLE VII - PROJECT INFORMATION SYSTEM

Data, results of methods, and procedure development will be made available to the U.S. Geological Survey with no restrictions.

ARTICLE VIII - PROPERTY MANAGEMENT AND DISPOSITION

There will not be non-expandable property acquired under this agreement.

ARTICLE IX - SPECIAL PROVISIONS